HL_8VVQ_102

3D structure

PDB id

8VVQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state of elongation inhibitor-treated mammalian ribosomes obtained from merged datasets

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CCAAGG

Length

6 nucleotides

Bulged bases

8VVQ|1|ZA|A|464

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVQ_102 not in the Motif Atlas

Geometric match to HL_5Y85_004

Geometric discrepancy: 0.0892

The information below is about HL_5Y85_004

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.3

Basepair signature

cWW-tSW-F

Number of instances in this motif group

62

Unit IDs

8VVQ|1|ZA|C|462
8VVQ|1|ZA|C|463
8VVQ|1|ZA|A|464
8VVQ|1|ZA|A|465
8VVQ|1|ZA|G|466
8VVQ|1|ZA|G|467

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain GB

eS6

Chain HC

eukaryotic elongation factor 1A

Chain U

L23