HL_8VVT_005

3D structure

PDB id

8VVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the rotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UCUGAUCG

Length

8 nucleotides

Bulged bases

8VVT|1|WA|C|210

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVT_005 not in the Motif Atlas

Geometric match to HL_8P9A_117

Geometric discrepancy: 0.2878

The information below is about HL_8P9A_117

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_13999.2

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

22

Unit IDs

8VVT|1|WA|U|204
8VVT|1|WA|C|205
8VVT|1|WA|U|206
8VVT|1|WA|G|207
8VVT|1|WA|A|208
8VVT|1|WA|U|209
8VVT|1|WA|C|210
8VVT|1|WA|G|211

Current chains

Chain WA

28S rRNA

Nearby chains

Chain X

L26