HL_8VVT_007

3D structure

PDB id

8VVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the rotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUGUGAG(B9B)C

Length

9 nucleotides

Bulged bases

8VVT|1|WA|G|232, 8VVT|1|WA|U|233, 8VVT|1|WA|G|234

QA status

Modified nucleotides: B9B

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVT_007 not in the Motif Atlas

Geometric match to HL_5J7L_144

Geometric discrepancy: 0.1304

The information below is about HL_5J7L_144

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

8VVT|1|WA|G|230
8VVT|1|WA|U|231
8VVT|1|WA|G|232
8VVT|1|WA|U|233
8VVT|1|WA|G|234
8VVT|1|WA|A|235
8VVT|1|WA|G|236
8VVT|1|WA|B9B|237
8VVT|1|WA|C|238

Current chains

Chain WA

28S rRNA

Nearby chains

Chain C

uL4

Chain X

L26

Chain YA

5.8S ribosomal RNA; 5.8S rRNA