HL_8VVT_010

3D structure

PDB id

8VVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the rotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGUAA(OMG)

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVT_010 not in the Motif Atlas

Geometric match to HL_8CRE_029

Geometric discrepancy: 0.0957

The information below is about HL_8CRE_029

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

8VVT|1|WA|C|368
8VVT|1|WA|G|369
8VVT|1|WA|U|370
8VVT|1|WA|A|371
8VVT|1|WA|A|372
8VVT|1|WA|OMG|373

Current chains

Chain WA

28S rRNA

Nearby chains

Chain C

uL4

Chain IA

L37

Chain KA

eL39