HL_8VVT_022

3D structure

PDB id

8VVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the rotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GCGAAAGAC

Length

9 nucleotides

Bulged bases

8VVT|1|WA|A|1635, 8VVT|1|WA|G|1638

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVT_022 not in the Motif Atlas

Geometric match to HL_8P9A_133

Geometric discrepancy: 0.105

The information below is about HL_8P9A_133

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_92598.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

13

Unit IDs

8VVT|1|WA|G|1632
8VVT|1|WA|C|1633
8VVT|1|WA|G|1634
8VVT|1|WA|A|1635
8VVT|1|WA|A|1636
8VVT|1|WA|A|1637
8VVT|1|WA|G|1638
8VVT|1|WA|A|1639
8VVT|1|WA|C|1640

Current chains

Chain WA

28S rRNA

Nearby chains

Chain A

L8

Chain IA

L37

Chain M

L15