HL_8VVT_024

3D structure

PDB id

8VVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the rotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGAAACG

Length

7 nucleotides

Bulged bases

8VVT|1|WA|C|1773

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVT_024 not in the Motif Atlas

Geometric match to HL_1U9S_001

Geometric discrepancy: 0.3792

The information below is about HL_1U9S_001

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_07380.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

3

Unit IDs

8VVT|1|WA|C|1768
8VVT|1|WA|G|1769
8VVT|1|WA|A|1770
8VVT|1|WA|A|1771
8VVT|1|WA|A|1772
8VVT|1|WA|C|1773
8VVT|1|WA|G|1774

Current chains

Chain WA

28S rRNA

Nearby chains

Chain PB

uS19