HL_8VVT_026

3D structure

PDB id

8VVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the rotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GG(UR3)AAGC

Length

7 nucleotides

Bulged bases

8VVT|1|WA|G|1874

QA status

Modified nucleotides: UR3

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVT_026 not in the Motif Atlas

Geometric match to HL_8CRE_024

Geometric discrepancy: 0.0963

The information below is about HL_8CRE_024

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

8VVT|1|WA|G|1869
8VVT|1|WA|G|1870
8VVT|1|WA|UR3|1871
8VVT|1|WA|A|1872
8VVT|1|WA|A|1873
8VVT|1|WA|G|1874
8VVT|1|WA|C|1875

Current chains

Chain WA

28S rRNA

Nearby chains

Chain I

L10