HL_8VVT_031

3D structure

PDB id

8VVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the rotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGCGGG

Length

6 nucleotides

Bulged bases

8VVT|1|WA|G|2326

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVT_031 not in the Motif Atlas

Geometric match to HL_8CRE_029

Geometric discrepancy: 0.2

The information below is about HL_8CRE_029

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

8VVT|1|WA|C|2322
8VVT|1|WA|G|2323
8VVT|1|WA|C|2324
8VVT|1|WA|G|2325
8VVT|1|WA|G|2326
8VVT|1|WA|G|2327

Current chains

Chain WA

28S rRNA

Nearby chains

Chain DA

eL32

Chain PA

eL28