HL_8VVT_034

3D structure

PDB id

8VVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the rotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGAGCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVT_034 not in the Motif Atlas

Geometric match to HL_8CRE_032

Geometric discrepancy: 0.1407

The information below is about HL_8CRE_032

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

8VVT|1|WA|C|2463
8VVT|1|WA|G|2464
8VVT|1|WA|A|2465
8VVT|1|WA|G|2466
8VVT|1|WA|C|2467
8VVT|1|WA|G|2468

Current chains

Chain WA

28S rRNA

Nearby chains

Chain IA

L37

Chain M

L15