HL_8VVT_039

3D structure

PDB id

8VVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the rotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUUCUCUUU

Length

9 nucleotides

Bulged bases

8VVT|1|WA|U|2636

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVT_039 not in the Motif Atlas

Geometric match to HL_8P9A_148

Geometric discrepancy: 0.2307

The information below is about HL_8P9A_148

Detailed Annotation

Pseudoknot geometry

Broad Annotation

Pseudoknot geometry

Motif group

HL_22758.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

8VVT|1|WA|G|2629
8VVT|1|WA|U|2630
8VVT|1|WA|U|2631
8VVT|1|WA|C|2632
8VVT|1|WA|U|2633
8VVT|1|WA|C|2634
8VVT|1|WA|U|2635
8VVT|1|WA|U|2636
8VVT|1|WA|U|2637

Current chains

Chain WA

28S rRNA

Nearby chains

Chain Q

eL19

Chain T

eL22