HL_8VVT_040

3D structure

PDB id

8VVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the rotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUUCGCC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVT_040 not in the Motif Atlas

Geometric match to HL_4V9F_039

Geometric discrepancy: 0.3321

The information below is about HL_4V9F_039

Detailed Annotation

Other HL

Broad Annotation

Other HL

Motif group

HL_67772.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

13

Unit IDs

8VVT|1|WA|G|2669
8VVT|1|WA|U|2670
8VVT|1|WA|U|2671
8VVT|1|WA|C|2672
8VVT|1|WA|G|2673
8VVT|1|WA|C|2674
8VVT|1|WA|C|2675

Current chains

Chain WA

28S rRNA

Nearby chains

Chain OA

eL43

Chain Q

eL19