HL_8VVT_048

3D structure

PDB id

8VVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the rotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UUUAAUUAAAA

Length

11 nucleotides

Bulged bases

8VVT|1|WA|A|3647, 8VVT|1|WA|A|3648, 8VVT|1|WA|U|3649, 8VVT|1|WA|A|3653

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVT_048 not in the Motif Atlas

Geometric match to HL_8CRE_044

Geometric discrepancy: 0.2615

The information below is about HL_8CRE_044

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01962.2

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

8VVT|1|WA|U|3644
8VVT|1|WA|U|3645
8VVT|1|WA|U|3646
8VVT|1|WA|A|3647
8VVT|1|WA|A|3648
8VVT|1|WA|U|3649
8VVT|1|WA|U|3650
8VVT|1|WA|A|3651
8VVT|1|WA|A|3652
8VVT|1|WA|A|3653
8VVT|1|WA|A|3654

Current chains

Chain WA

28S rRNA

Nearby chains

Chain A

L8

Chain IA

L37