HL_8VVT_050

3D structure

PDB id

8VVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the rotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AGAAA(PSU)

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVT_050 not in the Motif Atlas

Geometric match to HL_8CRE_046

Geometric discrepancy: 0.1103

The information below is about HL_8CRE_046

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

8VVT|1|WA|A|3729
8VVT|1|WA|G|3730
8VVT|1|WA|A|3731
8VVT|1|WA|A|3732
8VVT|1|WA|A|3733
8VVT|1|WA|PSU|3734

Current chains

Chain WA

28S rRNA

Nearby chains

Chain HA

L36

Chain NA

eL42