HL_8VVT_056

3D structure

PDB id

8VVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the rotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UCAAACGGUA(6MZ)CG

Length

13 nucleotides

Bulged bases

8VVT|1|WA|A|4219, 8VVT|1|WA|C|4226

QA status

Modified nucleotides: 6MZ

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVT_056 not in the Motif Atlas

Geometric match to HL_8CRE_054

Geometric discrepancy: 0.1239

The information below is about HL_8CRE_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91939.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

8

Unit IDs

8VVT|1|WA|U|4215
8VVT|1|WA|C|4216
8VVT|1|WA|A|4217
8VVT|1|WA|A|4218
8VVT|1|WA|A|4219
8VVT|1|WA|C|4220
8VVT|1|WA|G|4221
8VVT|1|WA|G|4222
8VVT|1|WA|U|4223
8VVT|1|WA|A|4224
8VVT|1|WA|6MZ|4225
8VVT|1|WA|C|4226
8VVT|1|WA|G|4227

Current chains

Chain WA

28S rRNA

Nearby chains

Chain AA

eL29

Chain I

L10

Chain S

eL21