HL_8VVT_059

3D structure

PDB id

8VVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the rotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UUCAG(OMU)ACG

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVT_059 not in the Motif Atlas

Geometric match to HL_8CRE_057

Geometric discrepancy: 0.2007

The information below is about HL_8CRE_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_80599.2

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

8VVT|1|WA|U|4306
8VVT|1|WA|U|4307
8VVT|1|WA|C|4308
8VVT|1|WA|A|4309
8VVT|1|WA|G|4310
8VVT|1|WA|OMU|4311
8VVT|1|WA|A|4312
8VVT|1|WA|C|4313
8VVT|1|WA|G|4314

Current chains

Chain WA

28S rRNA

Nearby chains

Chain NA

eL42

Chain P

eL18

Chain S

eL21

Chain Z

uL15