HL_8VVT_082

3D structure

PDB id

8VVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the rotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGUGACUC

Length

8 nucleotides

Bulged bases

8VVT|1|ZA|U|294

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVT_082 not in the Motif Atlas

Geometric match to HL_8CRE_196

Geometric discrepancy: 0.2694

The information below is about HL_8CRE_196

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_67772.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

13

Unit IDs

8VVT|1|ZA|G|288
8VVT|1|ZA|G|289
8VVT|1|ZA|U|290
8VVT|1|ZA|G|291
8VVT|1|ZA|A|292
8VVT|1|ZA|C|293
8VVT|1|ZA|U|294
8VVT|1|ZA|C|295

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain EB

eS4

Chain GB

S6

Chain LB

S11