HL_8VVT_093

3D structure

PDB id

8VVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the rotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AGGUGAAAUU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVT_093 not in the Motif Atlas

Geometric match to HL_8P9A_209

Geometric discrepancy: 0.1999

The information below is about HL_8P9A_209

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_38491.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

8VVT|1|ZA|A|957
8VVT|1|ZA|G|958
8VVT|1|ZA|G|959
8VVT|1|ZA|U|960
8VVT|1|ZA|G|961
8VVT|1|ZA|A|962
8VVT|1|ZA|A|963
8VVT|1|ZA|A|964
8VVT|1|ZA|U|965
8VVT|1|ZA|U|966

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain OB

uS11

Chain WA

Large subunit ribosomal RNA; LSU rRNA