HL_8VVT_100

3D structure

PDB id

8VVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the rotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AUUGAUAGCU

Length

10 nucleotides

Bulged bases

8VVT|1|ZA|U|1300, 8VVT|1|ZA|G|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVT_100 not in the Motif Atlas

Geometric match to HL_8P9A_216

Geometric discrepancy: 0.3066

The information below is about HL_8P9A_216

Detailed Annotation

GNRA wlth extra near cWW

Broad Annotation

GNRA wlth extra near cWW

Motif group

HL_98423.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

12

Unit IDs

8VVT|1|ZA|A|1295
8VVT|1|ZA|U|1296
8VVT|1|ZA|U|1297
8VVT|1|ZA|G|1298
8VVT|1|ZA|A|1299
8VVT|1|ZA|U|1300
8VVT|1|ZA|A|1301
8VVT|1|ZA|G|1302
8VVT|1|ZA|C|1303
8VVT|1|ZA|U|1304

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain DC

uS14

Chain FC

S27A

Chain PB

uS19