HL_8VVT_103

3D structure

PDB id

8VVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the rotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGUUCAG

Length

7 nucleotides

Bulged bases

8VVT|1|ZA|U|1462

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVT_103 not in the Motif Atlas

Geometric match to HL_8CRE_221

Geometric discrepancy: 0.3035

The information below is about HL_8CRE_221

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_76371.2

Basepair signature

cWW-tSH-F-F-F

Number of instances in this motif group

14

Unit IDs

8VVT|1|ZA|C|1460
8VVT|1|ZA|G|1461
8VVT|1|ZA|U|1462
8VVT|1|ZA|U|1463
8VVT|1|ZA|C|1464
8VVT|1|ZA|A|1465
8VVT|1|ZA|G|1466

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain AB

uS2

Chain GC

RACK1

Chain RB

eS17