HL_8VVT_106

3D structure

PDB id

8VVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the rotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUCAUAAGC

Length

9 nucleotides

Bulged bases

8VVT|1|ZA|C|1660, 8VVT|1|ZA|A|1663, 8VVT|1|ZA|G|1665

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVT_106 not in the Motif Atlas

Geometric match to HL_8CRE_224

Geometric discrepancy: 0.366

The information below is about HL_8CRE_224

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_61418.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

8VVT|1|ZA|G|1658
8VVT|1|ZA|U|1659
8VVT|1|ZA|C|1660
8VVT|1|ZA|A|1661
8VVT|1|ZA|U|1662
8VVT|1|ZA|A|1663
8VVT|1|ZA|A|1664
8VVT|1|ZA|G|1665
8VVT|1|ZA|C|1666

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain DC

uS14

Chain QB

S16

Chain TB

eS19

Chain UB

uS10