HL_8VVU_002
3D structure
- PDB id
- 8VVU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Anisomycin-bound mammalian ribosome with partially accommodated A-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- A(PSU)UGAAAAU
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8VVU_002 not in the Motif Atlas
- Geometric match to HL_6CFJ_107
- Geometric discrepancy: 0.2486
- The information below is about HL_6CFJ_107
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_81376.1
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 29
Unit IDs
8VVU|1|At|A|31
8VVU|1|At|PSU|32
8VVU|1|At|U|33
8VVU|1|At|G|34
8VVU|1|At|A|35
8VVU|1|At|A|36
8VVU|1|At|A|37
8VVU|1|At|A|38
8VVU|1|At|U|39
Current chains
- Chain At
- A-site tRNA
Nearby chains
- Chain PB
- S15
- Chain VA
- mRNA
- Chain WA
- Large subunit ribosomal RNA; LSU rRNA
- Chain XB
- S23
- Chain ZA
- Small subunit ribosomal RNA; SSU rRNA
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