HL_8VVU_005
3D structure
- PDB id
- 8VVU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Anisomycin-bound mammalian ribosome with partially accommodated A-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CCUAACACG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8VVU_005 not in the Motif Atlas
- Geometric match to HL_4V9Q_214
- Geometric discrepancy: 0.1561
- The information below is about HL_4V9Q_214
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_81376.1
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 29
Unit IDs
8VVU|1|SA|C|31
8VVU|1|SA|C|32
8VVU|1|SA|U|33
8VVU|1|SA|A|34
8VVU|1|SA|A|35
8VVU|1|SA|C|36
8VVU|1|SA|A|37
8VVU|1|SA|C|38
8VVU|1|SA|G|39
Current chains
- Chain SA
- P-site tRNA
Nearby chains
- Chain PB
- S15
- Chain QB
- uS9
- Chain TA
- Transfer RNA; tRNA
- Chain VA
- mRNA
- Chain ZA
- Small subunit ribosomal RNA; SSU rRNA
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