HL_8VVU_014

3D structure

PDB id

8VVU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Anisomycin-bound mammalian ribosome with partially accommodated A-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UCUGAUCG

Length

8 nucleotides

Bulged bases

8VVU|1|WA|C|210

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVU_014 not in the Motif Atlas

Geometric match to HL_1P6V_004

Geometric discrepancy: 0.3212

The information below is about HL_1P6V_004

Detailed Annotation

T-loop with 2 bulged bases not stacked

Broad Annotation

T-loop

Motif group

HL_28252.9

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

8VVU|1|WA|U|204
8VVU|1|WA|C|205
8VVU|1|WA|U|206
8VVU|1|WA|G|207
8VVU|1|WA|A|208
8VVU|1|WA|U|209
8VVU|1|WA|C|210
8VVU|1|WA|G|211

Current chains

Chain WA

28S rRNA

Nearby chains

Chain DA

L32

Chain X

L26