HL_8VVU_022

3D structure

PDB id

8VVU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Anisomycin-bound mammalian ribosome with partially accommodated A-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUCC

Length

4 nucleotides

Bulged bases

8VVU|1|WA|U|1185, 8VVU|1|WA|C|1186

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVU_022 not in the Motif Atlas

Geometric match to HL_8CRE_021

Geometric discrepancy: 0.3074

The information below is about HL_8CRE_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_70782.2

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

8VVU|1|WA|G|1184
8VVU|1|WA|U|1185
8VVU|1|WA|C|1186
8VVU|1|WA|C|1189

Current chains

Chain WA

28S rRNA

Nearby chains

Chain D

uL18

Chain I

L10

Chain XA

5S ribosomal RNA; 5S rRNA