HL_8VVU_030

3D structure

PDB id

8VVU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Anisomycin-bound mammalian ribosome with partially accommodated A-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

ACGUGCGAAU

Length

10 nucleotides

Bulged bases

8VVU|1|WA|U|1598, 8VVU|1|WA|A|1602, 8VVU|1|WA|A|1603

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVU_030 not in the Motif Atlas

Geometric match to HL_8CRE_019

Geometric discrepancy: 0.1143

The information below is about HL_8CRE_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_88205.2

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

7

Unit IDs

8VVU|1|WA|A|1595
8VVU|1|WA|C|1596
8VVU|1|WA|G|1597
8VVU|1|WA|U|1598
8VVU|1|WA|G|1599
8VVU|1|WA|C|1600
8VVU|1|WA|G|1601
8VVU|1|WA|A|1602
8VVU|1|WA|A|1603
8VVU|1|WA|U|1604

Current chains

Chain WA

28S rRNA

Nearby chains

Chain B

uL3

Chain IA

L37

Chain O

uL22