HL_8VVU_031

3D structure

PDB id

8VVU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Anisomycin-bound mammalian ribosome with partially accommodated A-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GCGAAAGAC

Length

9 nucleotides

Bulged bases

8VVU|1|WA|A|1632, 8VVU|1|WA|G|1635

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVU_031 not in the Motif Atlas

Geometric match to HL_8CRE_020

Geometric discrepancy: 0.1253

The information below is about HL_8CRE_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87553.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8VVU|1|WA|G|1629
8VVU|1|WA|C|1630
8VVU|1|WA|G|1631
8VVU|1|WA|A|1632
8VVU|1|WA|A|1633
8VVU|1|WA|A|1634
8VVU|1|WA|G|1635
8VVU|1|WA|A|1636
8VVU|1|WA|C|1637

Current chains

Chain WA

28S rRNA

Nearby chains

Chain A

uL2

Chain IA

L37

Chain M

L15