HL_8VVU_040

3D structure

PDB id

8VVU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Anisomycin-bound mammalian ribosome with partially accommodated A-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGCGGG

Length

6 nucleotides

Bulged bases

8VVU|1|WA|G|2323

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVU_040 not in the Motif Atlas

Geometric match to HL_8CRE_029

Geometric discrepancy: 0.2353

The information below is about HL_8CRE_029

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

8VVU|1|WA|C|2319
8VVU|1|WA|G|2320
8VVU|1|WA|C|2321
8VVU|1|WA|G|2322
8VVU|1|WA|G|2323
8VVU|1|WA|G|2324

Current chains

Chain WA

28S rRNA

Nearby chains

Chain DA

L32

Chain PA

L28