HL_8VVU_045

3D structure

PDB id

8VVU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Anisomycin-bound mammalian ribosome with partially accommodated A-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUUCAGAUCC

Length

10 nucleotides

Bulged bases

8VVU|1|WA|U|2532, 8VVU|1|WA|C|2533

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVU_045 not in the Motif Atlas

Geometric match to HL_8CRE_034

Geometric discrepancy: 0.16

The information below is about HL_8CRE_034

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81545.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8VVU|1|WA|G|2525
8VVU|1|WA|U|2526
8VVU|1|WA|U|2527
8VVU|1|WA|C|2528
8VVU|1|WA|A|2529
8VVU|1|WA|G|2530
8VVU|1|WA|A|2531
8VVU|1|WA|U|2532
8VVU|1|WA|C|2533
8VVU|1|WA|C|2534

Current chains

Chain WA

28S rRNA

Nearby chains

Chain FA

L34

Chain Q

eL19

Chain W

uL23