HL_8VVU_047

3D structure

PDB id

8VVU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Anisomycin-bound mammalian ribosome with partially accommodated A-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGUAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVU_047 not in the Motif Atlas

Geometric match to HL_8CRE_035

Geometric discrepancy: 0.1743

The information below is about HL_8CRE_035

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

8VVU|1|WA|G|2580
8VVU|1|WA|G|2581
8VVU|1|WA|U|2582
8VVU|1|WA|A|2583
8VVU|1|WA|A|2584
8VVU|1|WA|C|2585

Current chains

Chain WA

28S rRNA

Nearby chains

Chain FA

L34

Chain Y

L27