HL_8VVU_057

3D structure

PDB id

8VVU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Anisomycin-bound mammalian ribosome with partially accommodated A-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UUUAAUUAAAA

Length

11 nucleotides

Bulged bases

8VVU|1|WA|A|3644, 8VVU|1|WA|A|3645, 8VVU|1|WA|U|3646, 8VVU|1|WA|A|3650

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVU_057 not in the Motif Atlas

Geometric match to HL_8CRE_044

Geometric discrepancy: 0.1988

The information below is about HL_8CRE_044

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01962.2

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

8VVU|1|WA|U|3641
8VVU|1|WA|U|3642
8VVU|1|WA|U|3643
8VVU|1|WA|A|3644
8VVU|1|WA|A|3645
8VVU|1|WA|U|3646
8VVU|1|WA|U|3647
8VVU|1|WA|A|3648
8VVU|1|WA|A|3649
8VVU|1|WA|A|3650
8VVU|1|WA|A|3651

Current chains

Chain WA

28S rRNA

Nearby chains

Chain A

uL2

Chain IA

L37

Chain IC

nascent chain