HL_8VVU_068

3D structure

PDB id

8VVU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Anisomycin-bound mammalian ribosome with partially accommodated A-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GACAGAAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVU_068 not in the Motif Atlas

Geometric match to HL_8CRE_055

Geometric discrepancy: 0.1646

The information below is about HL_8CRE_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50860.2

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

8VVU|1|WA|G|4252
8VVU|1|WA|A|4253
8VVU|1|WA|C|4254
8VVU|1|WA|A|4255
8VVU|1|WA|G|4256
8VVU|1|WA|A|4257
8VVU|1|WA|A|4258
8VVU|1|WA|A|4259
8VVU|1|WA|C|4260

Current chains

Chain WA

28S rRNA

Nearby chains

Chain J

uL5