HL_8VVU_071

3D structure

PDB id

8VVU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Anisomycin-bound mammalian ribosome with partially accommodated A-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVU_071 not in the Motif Atlas

Geometric match to HL_8CRE_058

Geometric discrepancy: 0.1277

The information below is about HL_8CRE_058

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

8VVU|1|WA|U|4323
8VVU|1|WA|G|4324
8VVU|1|WA|A|4325
8VVU|1|WA|A|4326
8VVU|1|WA|A|4327
8VVU|1|WA|G|4328

Current chains

Chain WA

28S rRNA

Nearby chains

Chain D

uL18

Chain NA

eL42

Chain S

eL21