HL_8VVU_103

3D structure

PDB id

8VVU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Anisomycin-bound mammalian ribosome with partially accommodated A-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

ACUUUAAAUCCUU

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVU_103 not in the Motif Atlas

Geometric match to HL_8CRE_204

Geometric discrepancy: 0.1909

The information below is about HL_8CRE_204

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_68749.1

Basepair signature

cWW-cWW-F-F-tSH-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

8VVU|1|ZA|A|569
8VVU|1|ZA|C|570
8VVU|1|ZA|U|571
8VVU|1|ZA|U|572
8VVU|1|ZA|U|573
8VVU|1|ZA|A|574
8VVU|1|ZA|A|575
8VVU|1|ZA|A|576
8VVU|1|ZA|U|577
8VVU|1|ZA|C|578
8VVU|1|ZA|C|579
8VVU|1|ZA|U|580
8VVU|1|ZA|U|581

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain JB

S9

Chain YB

S24