HL_8VVU_112

3D structure

PDB id

8VVU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Anisomycin-bound mammalian ribosome with partially accommodated A-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UGCAAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVU_112 not in the Motif Atlas

Geometric match to HL_8CRE_018

Geometric discrepancy: 0.1007

The information below is about HL_8CRE_018

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

8VVU|1|ZA|U|1178
8VVU|1|ZA|G|1179
8VVU|1|ZA|C|1180
8VVU|1|ZA|A|1181
8VVU|1|ZA|A|1182
8VVU|1|ZA|A|1183

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain MA

eL41

Chain OA

eL43

Chain WA

Large subunit ribosomal RNA; LSU rRNA