HL_8VVV_005

3D structure

PDB id

8VVV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the nonrotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UCUGAUCG

Length

8 nucleotides

Bulged bases

8VVV|1|5|C|210

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVV_005 not in the Motif Atlas

Geometric match to HL_3VJR_001

Geometric discrepancy: 0.3433

The information below is about HL_3VJR_001

Detailed Annotation

T-loop with 2 bulged bases not stacked

Broad Annotation

T-loop with 2 bulged bases not stacked

Motif group

HL_13999.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

8VVV|1|5|U|204
8VVV|1|5|C|205
8VVV|1|5|U|206
8VVV|1|5|G|207
8VVV|1|5|A|208
8VVV|1|5|U|209
8VVV|1|5|C|210
8VVV|1|5|G|211

Current chains

Chain 5

28S rRNA

Nearby chains

Chain Y

L26

Chain e

eL32