HL_8VVV_019

3D structure

PDB id

8VVV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the nonrotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

ACGUGCGAAU

Length

10 nucleotides

Bulged bases

8VVV|1|5|U|1602, 8VVV|1|5|A|1606, 8VVV|1|5|A|1607

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVV_019 not in the Motif Atlas

Geometric match to HL_8CRE_019

Geometric discrepancy: 0.1226

The information below is about HL_8CRE_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_88205.2

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

7

Unit IDs

8VVV|1|5|A|1599
8VVV|1|5|C|1600
8VVV|1|5|G|1601
8VVV|1|5|U|1602
8VVV|1|5|G|1603
8VVV|1|5|C|1604
8VVV|1|5|G|1605
8VVV|1|5|A|1606
8VVV|1|5|A|1607
8VVV|1|5|U|1608

Current chains

Chain 5

28S rRNA

Nearby chains

Chain B

uL3

Chain P

uL22

Chain j

eL37