HL_8VVV_020

3D structure

PDB id

8VVV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the nonrotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCGAAAGAC

Length

9 nucleotides

Bulged bases

8VVV|1|5|A|1636, 8VVV|1|5|G|1639

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVV_020 not in the Motif Atlas

Geometric match to HL_8CRE_020

Geometric discrepancy: 0.1312

The information below is about HL_8CRE_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87553.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8VVV|1|5|G|1633
8VVV|1|5|C|1634
8VVV|1|5|G|1635
8VVV|1|5|A|1636
8VVV|1|5|A|1637
8VVV|1|5|A|1638
8VVV|1|5|G|1639
8VVV|1|5|A|1640
8VVV|1|5|C|1641

Current chains

Chain 5

28S rRNA

Nearby chains

Chain A

uL2

Chain N

eL15

Chain j

eL37