HL_8VVV_034

3D structure

PDB id

8VVV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the nonrotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUUCAGAUCC

Length

10 nucleotides

Bulged bases

8VVV|1|5|U|2536, 8VVV|1|5|C|2537

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVV_034 not in the Motif Atlas

Geometric match to HL_4V9F_037

Geometric discrepancy: 0.1315

The information below is about HL_4V9F_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77449.1

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

14

Unit IDs

8VVV|1|5|G|2529
8VVV|1|5|U|2530
8VVV|1|5|U|2531
8VVV|1|5|C|2532
8VVV|1|5|A|2533
8VVV|1|5|G|2534
8VVV|1|5|A|2535
8VVV|1|5|U|2536
8VVV|1|5|C|2537
8VVV|1|5|C|2538

Current chains

Chain 5

28S rRNA

Nearby chains

Chain R

eL19

Chain X

uL23

Chain g

eL34