HL_8VVV_038

3D structure

PDB id

8VVV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the nonrotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUUCGCC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVV_038 not in the Motif Atlas

Geometric match to HL_8P9A_218

Geometric discrepancy: 0.3424

The information below is about HL_8P9A_218

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_63894.2

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

19

Unit IDs

8VVV|1|5|G|2670
8VVV|1|5|U|2671
8VVV|1|5|U|2672
8VVV|1|5|C|2673
8VVV|1|5|G|2674
8VVV|1|5|C|2675
8VVV|1|5|C|2676

Current chains

Chain 5

28S rRNA

Nearby chains

Chain R

eL19

Chain p

eL43