HL_8VVV_041
3D structure
- PDB id
- 8VVV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian ribosomes bound to Anisomycin in the nonrotated conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CGCAGCAG
- Length
- 8 nucleotides
- Bulged bases
- 8VVV|1|5|C|2800, 8VVV|1|5|G|2802, 8VVV|1|5|A|2804
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8VVV_041 not in the Motif Atlas
- Geometric match to HL_8P9A_152
- Geometric discrepancy: 0.0938
- The information below is about HL_8P9A_152
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_28592.2
- Basepair signature
- cWW-F-F-F
- Number of instances in this motif group
- 12
Unit IDs
8VVV|1|5|C|2798
8VVV|1|5|G|2799
8VVV|1|5|C|2800
8VVV|1|5|A|2801
8VVV|1|5|G|2802
8VVV|1|5|C|2803
8VVV|1|5|A|2804
8VVV|1|5|G|2805
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain C
- uL4
- Chain P
- uL22
- Chain j
- eL37
- Chain l
- eL39
Coloring options: