HL_8VVV_046

3D structure

PDB id

8VVV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the nonrotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUUAAUUAAAA

Length

11 nucleotides

Bulged bases

8VVV|1|5|A|3648, 8VVV|1|5|A|3649, 8VVV|1|5|U|3650, 8VVV|1|5|A|3654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVV_046 not in the Motif Atlas

Geometric match to HL_4WF9_043

Geometric discrepancy: 0.1989

The information below is about HL_4WF9_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87681.1

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

8VVV|1|5|U|3645
8VVV|1|5|U|3646
8VVV|1|5|U|3647
8VVV|1|5|A|3648
8VVV|1|5|A|3649
8VVV|1|5|U|3650
8VVV|1|5|U|3651
8VVV|1|5|A|3652
8VVV|1|5|A|3653
8VVV|1|5|A|3654
8VVV|1|5|A|3655

Current chains

Chain 5

28S rRNA

Nearby chains

Chain A

uL2

Chain j

eL37