HL_8VVV_055

3D structure

PDB id

8VVV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the nonrotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAGAAGGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVV_055 not in the Motif Atlas

Geometric match to HL_7A0S_055

Geometric discrepancy: 0.2296

The information below is about HL_7A0S_055

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_52651.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

29

Unit IDs

8VVV|1|5|C|4276
8VVV|1|5|A|4277
8VVV|1|5|G|4278
8VVV|1|5|A|4279
8VVV|1|5|A|4280
8VVV|1|5|G|4281
8VVV|1|5|G|4282
8VVV|1|5|G|4283

Current chains

Chain 5

28S rRNA

Nearby chains

Chain I

L10

Chain T

eL21