HL_8VVV_058
3D structure
- PDB id
- 8VVV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian ribosomes bound to Anisomycin in the nonrotated conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UUU(E6G)GGUUUUA
- Length
- 11 nucleotides
- Bulged bases
- 8VVV|1|5|U|4360
- QA status
- Modified nucleotides: E6G
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8VVV_058 not in the Motif Atlas
- Geometric match to HL_7JRT_001
- Geometric discrepancy: 0.3488
- The information below is about HL_7JRT_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_36265.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 11
Unit IDs
8VVV|1|5|U|4358
8VVV|1|5|U|4359
8VVV|1|5|U|4360
8VVV|1|5|E6G|4361
8VVV|1|5|G|4362
8VVV|1|5|G|4363
8VVV|1|5|U|4364
8VVV|1|5|U|4365
8VVV|1|5|U|4366
8VVV|1|5|U|4367
8VVV|1|5|A|4368
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain L
- eL13
- Chain a
- uL15
- Chain i
- eL36
- Chain o
- eL42
Coloring options: