HL_8VVV_059

3D structure

PDB id

8VVV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the nonrotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGUUCAUAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVV_059 not in the Motif Atlas

Geometric match to HL_8P9A_172

Geometric discrepancy: 0.3418

The information below is about HL_8P9A_172

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_52011.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

8VVV|1|5|C|4423
8VVV|1|5|G|4424
8VVV|1|5|U|4425
8VVV|1|5|U|4426
8VVV|1|5|C|4427
8VVV|1|5|A|4428
8VVV|1|5|U|4429
8VVV|1|5|A|4430
8VVV|1|5|G|4431

Current chains

Chain 5

28S rRNA

Nearby chains

Chain I

L10

Chain m

eL40

Chain v

eukaryotic elongation factor 2