HL_8VVV_079

3D structure

PDB id

8VVV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the nonrotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGUGACUC

Length

8 nucleotides

Bulged bases

8VVV|1|9|U|294

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVV_079 not in the Motif Atlas

Geometric match to HL_8CRE_196

Geometric discrepancy: 0.2646

The information below is about HL_8CRE_196

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_67772.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

13

Unit IDs

8VVV|1|9|G|288
8VVV|1|9|G|289
8VVV|1|9|U|290
8VVV|1|9|G|291
8VVV|1|9|A|292
8VVV|1|9|C|293
8VVV|1|9|U|294
8VVV|1|9|C|295

Current chains

Chain 9

18S rRNA

Nearby chains

Chain EE

eS4

Chain GG

eS6

Chain LL

uS17