HL_8VVV_083

3D structure

PDB id

8VVV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the nonrotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCAAGG

Length

6 nucleotides

Bulged bases

8VVV|1|9|A|464

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVV_083 not in the Motif Atlas

Geometric match to HL_8P9A_200

Geometric discrepancy: 0.1403

The information below is about HL_8P9A_200

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.3

Basepair signature

cWW-tSW-F

Number of instances in this motif group

62

Unit IDs

8VVV|1|9|C|462
8VVV|1|9|C|463
8VVV|1|9|A|464
8VVV|1|9|A|465
8VVV|1|9|G|466
8VVV|1|9|G|467

Current chains

Chain 9

18S rRNA

Nearby chains

Chain GG

eS6

Chain V

L23