HL_8VVV_086

3D structure

PDB id

8VVV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the nonrotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

ACUUUAAAUCCUU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVV_086 not in the Motif Atlas

Geometric match to HL_8P9A_203

Geometric discrepancy: 0.1507

The information below is about HL_8P9A_203

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_68749.1

Basepair signature

cWW-cWW-F-F-tSH-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

8VVV|1|9|A|569
8VVV|1|9|C|570
8VVV|1|9|U|571
8VVV|1|9|U|572
8VVV|1|9|U|573
8VVV|1|9|A|574
8VVV|1|9|A|575
8VVV|1|9|A|576
8VVV|1|9|U|577
8VVV|1|9|C|578
8VVV|1|9|C|579
8VVV|1|9|U|580
8VVV|1|9|U|581

Current chains

Chain 9

18S rRNA

Nearby chains

Chain EE

eS4

Chain JJ

uS4

Chain YY

eS24