HL_8VVV_087

3D structure

PDB id

8VVV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the nonrotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAGCCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVV_087 not in the Motif Atlas

Geometric match to HL_8CRE_205

Geometric discrepancy: 0.1188

The information below is about HL_8CRE_205

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_93535.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

6

Unit IDs

8VVV|1|9|C|618
8VVV|1|9|A|619
8VVV|1|9|G|620
8VVV|1|9|C|621
8VVV|1|9|C|622
8VVV|1|9|G|623

Current chains

Chain 9

18S rRNA

Nearby chains

Chain XX

uS12