HL_8VVV_097

3D structure

PDB id

8VVV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the nonrotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAC(B8N)CAACAC

Length

10 nucleotides

Bulged bases

8VVV|1|9|C|1247, 8VVV|1|9|A|1253

QA status

Modified nucleotides: B8N

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVV_097 not in the Motif Atlas

Geometric match to HL_8P9A_215

Geometric discrepancy: 0.2538

The information below is about HL_8P9A_215

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_97521.1

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

8VVV|1|9|G|1245
8VVV|1|9|A|1246
8VVV|1|9|C|1247
8VVV|1|9|B8N|1248
8VVV|1|9|C|1249
8VVV|1|9|A|1250
8VVV|1|9|A|1251
8VVV|1|9|C|1252
8VVV|1|9|A|1253
8VVV|1|9|C|1254

Current chains

Chain 9

18S rRNA

Nearby chains

Chain QQ

uS9

Chain UU

uS10

Chain dd

uS14

Chain w

Serpine mRNA binding protein 1