HL_8VVV_102

3D structure

PDB id

8VVV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the nonrotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGUUCAG

Length

7 nucleotides

Bulged bases

8VVV|1|9|U|1462

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVV_102 not in the Motif Atlas

Geometric match to HL_8CRE_221

Geometric discrepancy: 0.3403

The information below is about HL_8CRE_221

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_76371.2

Basepair signature

cWW-tSH-F-F-F

Number of instances in this motif group

14

Unit IDs

8VVV|1|9|C|1460
8VVV|1|9|G|1461
8VVV|1|9|U|1462
8VVV|1|9|U|1463
8VVV|1|9|C|1464
8VVV|1|9|A|1465
8VVV|1|9|G|1466

Current chains

Chain 9

18S rRNA

Nearby chains

Chain AA

uS2

Chain RR

eS17

Chain gg

RACK1